This is with debian undstable xorg and blackbox, running quakeforge (http://quakeforge.net/). When quakeforge is running full screen and updates happen in another window (eg, echoed console messages in the xterm from which I launched qf (eg, nq-glx)). This does not happen with the LLVM driver (I had symbol problems with a bad build of nouveau and wound up with the LLVM driver for a while). a good test command line: nq-glx +set vid_width WIDTH +set vid_height HEIGHT +set vid_fullscreen 1 where WIDTH and HEIGHT are the full size dimensions of the display. BTW, vid_fullscreen can be changed while nq-glx is running, but vid_width and vid_height cannot. I Just tried it with blender in fullscreen mode with a compile going in another xterm and the same problem occurred.
This bug was fixed in march on xf86-video-nouveau side. If you can't update xf86-video-nouveau, you can workaround it by disabling pageflipping in xorg.conf (see man nouveau).
Use of freedesktop.org services, including Bugzilla, is subject to our Code of Conduct. How we collect and use information is described in our Privacy Policy.